PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01782.1.p
Common NameEUGRSUZ_I01782, LOC104419249
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 209aa    MW: 23430.4 Da    PI: 6.0172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01782.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l d+++ +G g W++ a+  g+ Rt+k+c++rw++yl
  Eucgr.I01782.1.p 16 KGPWTLEEDLILMDYIANHGEGVWNSLAKAAGLQRTGKSCRLRWLNYL 63
                      79********************************************97 PP
2Myb_DNA-binding50.45.1e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE++l++++  ++G++ W+ Ia++++ gRt++++k++w++
  Eucgr.I01782.1.p  69 RGNITPEEQLLIIHLQSMWGNR-WSEIAKHLP-GRTDNEIKNYWRT 112
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23966IPR009057Homeodomain-like
PROSITE profilePS5129416.4161163IPR017930Myb domain
SuperFamilySSF466896.74E-3013110IPR009057Homeodomain-like
SMARTSM007179.7E-121565IPR001005SANT/Myb domain
PfamPF002498.7E-161663IPR001005SANT/Myb domain
CDDcd001672.21E-101863No hitNo description
PROSITE profilePS5129423.89964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2367118IPR009057Homeodomain-like
SMARTSM007171.1E-1468116IPR001005SANT/Myb domain
PfamPF002491.1E-1469112IPR001005SANT/Myb domain
CDDcd001674.82E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDKKPCYRTQ DPQVRKGPWT LEEDLILMDY IANHGEGVWN SLAKAAGLQR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI IHLQSMWGNR WSEIAKHLPG RTDNEIKNYW RTKIQKHIIK  120
QSETEINDLT IPPSSANACT DHRGVSAANT IEIACSPPSD QGGSGETMLS ALPPAQELND  180
SACWSVEDLW PIQSLISGMG DDAQYYSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121183108B-MYB
1h8a_C2e-251111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01782.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029159.11e-155PREDICTED: myb-related protein 340
SwissprotP813913e-74MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A059APX01e-153A0A059APX0_EUCGR; Uncharacterized protein
STRINGXP_010029159.11e-154(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.15e-75myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]