PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01798.3.p
Common NameEUGRSUZ_I01798
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 194aa    MW: 21834.1 Da    PI: 8.6134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01798.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-051436223
                      EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                      kC  C + F+rk++L+ H++  H
  Eucgr.I01798.3.p 14 KCAACFRQFNRKEHLVEHMKIsH 36
                      6999****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.2611342IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-51436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.03E-51461No hitNo description
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.109.2E-8132181IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDYRSESTET LRNKCAACFR QFNRKEHLVE HMKISHHSRH EPMCGICKKH CRSFESLREH  60
LIGPLPKQEC KNIFSILGCR FCLTILDNSN SRRAHEGRCQ FSGVNAGLLA RLANLGIHDK  120
LSIDTGRTRG PQVVALACKM VGGGSDGSLD LCARVCIIDE YENIIFHTYV KPTIPVTNYR  180
YIFNCASSRE TSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01798.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029187.11e-132PREDICTED: RNA exonuclease 4
TrEMBLA0A059AQU21e-141A0A059AQU2_EUCGR; Uncharacterized protein
STRINGXP_010029187.11e-132(Eucalyptus grandis)