PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01846.1.p
Common NameEUGRSUZ_I01846
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 103aa    MW: 11593.4 Da    PI: 9.8756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01846.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-13845845
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       rq tf kRr g+lKKA+EL   C +e a+ ++s++g+
  Eucgr.I01846.1.p  8 ARQATFLKRRPGLLKKASELYAFCSVEMAINVLSPRGE 45
                      69**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-4152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.6453IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-15563IPR002100Transcription factor, MADS-box
PfamPF003195.6E-14749IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-61530IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-63051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MTKEGANARQ ATFLKRRPGL LKKASELYAF CSVEMAINVL SPRGESFYFG HPSVDVAVNM  60
HEHPKMAHID ATRQAQTDRE QFLEKLNKQY ANVLEQMKVG IK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01846.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030754.13e-56PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059AQH65e-71A0A059AQH6_EUCGR; Uncharacterized protein
STRINGXP_010030757.16e-64(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-16AGAMOUS-like 62