PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01867.1.p
Common NameEUGRSUZ_I01867
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18210.1 Da    PI: 9.9961
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-14946845
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       rq t skRr g+lKKA+EL   C++e avi++s++gk
  Eucgr.I01867.1.p  9 ARQATSSKRRPGLLKKASELYAFCAIEMAVIVLSPRGK 46
                      699**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.077154IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-7253IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-16564IPR002100Transcription factor, MADS-box
PfamPF003197.2E-15850IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MMTKEGANAR QATSSKRRPG LLKKASELYA FCAIEMAVIV LSPRGKPFYF GHPSVDATVD  60
KREHPKMACI DATQQAQTDR QQILEKLNKQ YVDVLEKLKA GMEGAKEMSD IKPLRFKNFS  120
FNDFVVFGKW LEDVENAVDK RRTELLAPRV FKFNSMPGSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01867.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030754.19e-97PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059AQ561e-116A0A059AQ56_EUCGR; Uncharacterized protein
STRINGXP_010030759.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-16AGAMOUS-like 61