PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01921.1.p
Common NameEUGRSUZ_I01921, LOC104420671
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 403aa    MW: 45505.9 Da    PI: 7.2362
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01921.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-1471127152
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkk 52 
                       s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k
  Eucgr.I01921.1.p  71 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDEEEAAARAYDMAALK 127
                       789******************888855555447*********************986 PP
2AP251.91.8e-16173224155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Eucgr.I01921.1.p 173 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 224
                       89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1171127IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1571140IPR016177DNA-binding domain
PROSITE profilePS5103219.07272138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-1572139IPR001471AP2/ERF domain
SMARTSM003804.1E-2572144IPR001471AP2/ERF domain
PRINTSPR003672.9E-57384IPR001471AP2/ERF domain
PfamPF008479.3E-12173224IPR001471AP2/ERF domain
CDDcd000181.29E-25173234No hitNo description
SuperFamilySSF541714.77E-18173234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-18174233IPR001471AP2/ERF domain
SMARTSM003809.2E-27174238IPR001471AP2/ERF domain
PROSITE profilePS5103218.9174232IPR001471AP2/ERF domain
PRINTSPR003672.9E-5214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MERLATVKKE ENMGRRHMCA NDGIAPVVRC IKRRRREPSM VNLGLNADQS QPHQLGDQVS  60
AATATTPKRS SRFRGVSRHR WTGRYEAHLW DKLSWNVTQK KKGKQVYLGA YDEEEAAARA  120
YDMAALKDWG TSTITNFPIS DYEKEIEIMQ TVTKEEYLAS LRRKSSGFSR GVSKYRGVAR  180
HHHNGKWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN FDLSTYIRWL  240
KPGTNGSLVI LPEQHIFTDS SIALSATNYI PVEETKSSFF LANPFTEDYL NNIPQKQDTF  300
ESKVLISSCS KSSSSPTALG LLLRSSLFRE LVEKNTTVSE DNTDCEEEKT QPPQGSDDEF  360
TGIFCDGLGD VPFICSSDRD DEQLQERELH SFCETLRNPS KG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01921.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718006.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059AR510.0A0A059AR51_EUCGR; Uncharacterized protein
STRINGXP_010030772.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-81AP2 family protein