PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01998.1.p
Common NameEUGRSUZ_I01998
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 566aa    MW: 61780.4 Da    PI: 9.1055
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01998.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-30296352259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vkg  fprsYY+C++ +C+vkkkve+s  d++++eitY+g+H+he
  Eucgr.I01998.1.p 296 EDGYNWRKYGQKQVKGCGFPRSYYKCSHLNCSVKKKVEHSL-DGRITEITYRGQHQHE 352
                       7****************************************.***************8 PP
2WRKY102.52.4e-32473531159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK+vkgs +prsYY+Ct+agC+v+k++er+a dpk v++tYeg+Hnh+
  Eucgr.I01998.1.p 473 LDDGFKWRKYGQKVVKGSSYPRSYYKCTYAGCNVRKHIERAALDPKSVITTYEGKHNHT 531
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-27290354IPR003657WRKY domain
PROSITE profilePS5081121.884290354IPR003657WRKY domain
SuperFamilySSF1182903.01E-24293354IPR003657WRKY domain
SMARTSM007743.7E-32295353IPR003657WRKY domain
PfamPF031061.1E-22296351IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34458533IPR003657WRKY domain
SuperFamilySSF1182901.11E-27465533IPR003657WRKY domain
PROSITE profilePS5081134.911468533IPR003657WRKY domain
SMARTSM007742.9E-37473532IPR003657WRKY domain
PfamPF031061.0E-24474530IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MNTLFIKNLI YVFLASFDEV KQQKKNHYKK VGLLTELLLE SEDKKRLGQD GKWRWSAKTT  60
PAPVDTGLSQ RRKKLSQDMA GKQPPPPLRP TISVPPRPPA AAMFGPCASP GPLTLVSSFF  120
AESDGGSFSE LLAGAMYSPL AVNAAGPSSF LWDYPRENPS REGEPRDGQA GLPVGAVKSP  180
LFTVPPGLSP SGLLLSPGFF SPKSPFGMSH QQALAQVTAQ AHVALARSHE HSQLEINPPS  240
EASKEPLPDE PSLMPNEDSH QLSPSEATTS MAESSDFVSS SHKWEALPMV LEKPTEDGYN  300
WRKYGQKQVK GCGFPRSYYK CSHLNCSVKK KVEHSLDGRI TEITYRGQHQ HEMPQAKRTS  360
KDGNNLNRST NSLAKSQAVL QGQSGRQSAP AMLRSGQDEE SSQAIASNTS GLSNYVELDD  420
AKSKGDGSDV DNDDVDAGDD KSNPKQKIVP IPSSKYVTEP KIVLQTRSEV DLLDDGFKWR  480
KYGQKVVKGS SYPRSYYKCT YAGCNVRKHI ERAALDPKSV ITTYEGKHNH TAPSAGKRGR  540
TVEATEFGDA QRPSVLRLKE EQVAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-34296534878Probable WRKY transcription factor 4
2lex_A4e-34296534878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01998.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029360.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-114WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A059AQJ40.0A0A059AQJ4_EUCGR; Uncharacterized protein
STRINGXP_010029360.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-101WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]