PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02038.1.p
Common NameEUGRSUZ_I02038, LOC104419427
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 339aa    MW: 37109.3 Da    PI: 7.366
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.65.5e-31541712105
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasn 84 
                        g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl  ak++i+el+ +           ++++s  +++++ + +++
  Eucgr.I02038.1.p  54 FGGKDRHSKVCTIKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDVAKHEIDELPPLpliqpghnlgHQIHQSILSKSHEIVGDDS 146
                       689*************************************************************77666666652222222222222222222 PP

               TCP  85 sssg...kaaksaa.kskksqksaa 105
                       ss++   k+++s + + ++ ++++ 
  Eucgr.I02038.1.p 147 SSKDglvKSSRSRTwSCSDHHQEDD 171
                       2222454333333322222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.34656114IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2856171IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMMNIEPKEA DSPPTREKIA STNHKILKAS SSSGSAAHWL RSRDPRIVRV SRAFGGKDRH  60
SKVCTIKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLDVAKHE IDELPPLPLI  120
QPGHNLGHQI HQSILSKSHE IVGDDSSSKD GLVKSSRSRT WSCSDHHQED DQEPNDCGAS  180
KVQAQNYFLS RTSSSFHLEP PNMSLLPNSA AIHGFTSQIG DPHHQNVNNF IPFSLHSGSS  240
QIFLCPPGVT TAPTPSYFPS LFATSTDSNS DPRPANHQFQ FVSSVNSHNI LPSSLAPPLL  300
ISASYPSFMR ASHLDGSCTE EGLHSHNSFG SDQPNKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1861115155Putative transcription factor PCF6
5zkt_B2e-1861115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029390.10.0PREDICTED: transcription factor TCP17
TrEMBLA0A059ARG80.0A0A059ARG8_EUCGR; Uncharacterized protein
STRINGXP_010029390.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-48plastid transcription factor 1