PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02059.1.p
Common NameEUGRSUZ_I02059, LOC104419444
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28786.9 Da    PI: 10.0611
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+e+s+
  Eucgr.I02059.1.p  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEFST 59
                      79***********************************************96 PP
2K-box1003.4e-338517510100
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + + + s++ e+ kL ++ie Lqr++R+l Ge+L++Lsl+eLq LeqqL+++lk+iR++Kn+l++e+i++lqkkek+lqe+n+ L+kk++e
  Eucgr.I02059.1.p  85 SPQVQGSWSLEYPKLVARIEVLQRNIRNLSGEELDPLSLRELQYLEQQLDTALKRIRTRKNQLMHESISQLQKKEKSLQEQNNVLSKKIKE 175
                       4445679*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.875161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-33287IPR002100Transcription factor, MADS-box
CDDcd002655.21E-41279No hitNo description
PRINTSPR004044.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.2989179IPR002487Transcription factor, K-box
PfamPF014863.2E-2889173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEFSTD  60
SCMESILERY ERYTYAERQQ VATDSPQVQG SWSLEYPKLV ARIEVLQRNI RNLSGEELDP  120
LSLRELQYLE QQLDTALKRI RTRKNQLMHE SISQLQKKEK SLQEQNNVLS KKIKENEKVM  180
RESGQWEQQT PAPTTSSFML QPTLPLPSLT IGNTFQTPHV LGGAEQEERS QARPANTLMP  240
PWMIRRSNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-20184183MEF2 CHIMERA
6byy_B5e-20184183MEF2 CHIMERA
6byy_C5e-20184183MEF2 CHIMERA
6byy_D5e-20184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02059.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029407.10.0PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotD7SMN61e-110FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A059AR450.0A0A059AR45_EUCGR; Uncharacterized protein
STRINGXP_010029407.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-86AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]