PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02059.2.p
Common NameEUGRSUZ_I02059
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20780.9 Da    PI: 10.4173
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02059.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.2e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+e+s+
  Eucgr.I02059.2.p  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEFST 59
                      79***********************************************96 PP
2K-box88.21.6e-29851611086
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                       + + + s++ e+ kL ++ie Lqr++R+l Ge+L++Lsl+eLq LeqqL+++lk+iR++Kn+l++e+i++lqkk ++
  Eucgr.I02059.2.p  85 SPQVQGSWSLEYPKLVARIEVLQRNIRNLSGEELDPLSLRELQYLEQQLDTALKRIRTRKNQLMHESISQLQKKVRA 161
                       4455679*******************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.875161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-33287IPR002100Transcription factor, MADS-box
CDDcd002651.15E-39279No hitNo description
PRINTSPR004041.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-2488161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.44789178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEFSTD  60
SCMESILERY ERYTYAERQQ VATDSPQVQG SWSLEYPKLV ARIEVLQRNI RNLSGEELDP  120
LSLRELQYLE QQLDTALKRI RTRKNQLMHE SISQLQKKVR ARASRASECN FIWSCRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20184183MEF2 CHIMERA
6byy_B1e-20184183MEF2 CHIMERA
6byy_C1e-20184183MEF2 CHIMERA
6byy_D1e-20184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02059.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029407.11e-111PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotD7SMN61e-91FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A059ARB21e-127A0A059ARB2_EUCGR; Uncharacterized protein
STRINGXP_010029407.11e-111(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]