PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I02090.1.p

Common Name

EUGRSUZ_I02090

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 167aa MW: 19341.5 Da PI: 5.9338

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I02090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	7.1e-15	66	124	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v L +eN++L ++l++ ++ +k+ +e+ Eucgr.I02090.1.p 66 RKQRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLMDKLNHASEIKDKVLQEN 124 689********************************************999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-13	62	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	64	127	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-12	66	138	No hit	No description
Pfam	PF00170	7.4E-13	66	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.44E-13	66	114	No hit	No description
CDD	cd14702	1.15E-17	67	115	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MEPVHLSMIH DQPNTYNHYN TPSPTFYNGQ FPSQIQELGA PSPSFSSNPS TSDEADEQQL 60 MLINERKQRR MISNRESARR SRMRKQRHLD ELWSQVVWLR NENHQLMDKL NHASEIKDKV 120 LQENAQLKEE TCGLRQTITE MQLNNTYSTL RDLEDVPCNL GTPSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I02090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029442.1	1e-120	PREDICTED: basic leucine zipper 43
Swissprot	Q9FMC2	1e-44	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A059ARP2	1e-121	A0A059ARP2_EUCGR; Uncharacterized protein
STRING	XP_010029442.1	1e-120	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-47	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Eucgr.I02090.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]