PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02207.1.p
Common NameEUGRSUZ_I02207, LOC104420746
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 232aa    MW: 25666.4 Da    PI: 5.413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02207.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13141185347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+e+++ + + +G g+Wk+I++++   +t+ q+ s+ qky
  Eucgr.I02207.1.p 141 AWTKEEHERFLGGLEIYGRGDWKSISKYVVMSKTPTQVASHAQKY 185
                       6*****************************999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.93491IPR001005SANT/Myb domain
SuperFamilySSF466896.89E-53895IPR009057Homeodomain-like
PROSITE profilePS5129418.203134190IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-9134189IPR009057Homeodomain-like
SuperFamilySSF466893.52E-16136190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16137189IPR006447Myb domain, plants
SMARTSM007172.2E-9138188IPR001005SANT/Myb domain
PfamPF002491.8E-11141185IPR001005SANT/Myb domain
CDDcd001673.52E-9141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MANAAFPTSA TFLQECTSAE RSPEVGYVGY ENDGFGIWTF EENKRFENAL ATLSGEIDLA  60
TLDRFVQGIA PEFPGKSVEQ VGRHLEALWH DVELIESAEV TFPEHWTVDE GGDSDGGPPP  120
VQKSKGKSKV EPKGERKRGI AWTKEEHERF LGGLEIYGRG DWKSISKYVV MSKTPTQVAS  180
HAQKYFNRKD RTENQKLRRS INDTHNISNI GAIASMSSSP PSTRYPGETD A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02207.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030835.11e-172PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059ARW31e-171A0A059ARW3_EUCGR; Uncharacterized protein
STRINGXP_010030835.11e-172(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-35MYB family protein