PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02255.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 189aa    MW: 21505.1 Da    PI: 10.0166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02255.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.25e-173484656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqN Ra++k
  Eucgr.I02255.1.p 34 RLSLEQVKALEKSFEIGNKLEPERKIQLARALGLQPRQIAIWFQNWRARWK 84
                      57889*********************************************9 PP
2HD-ZIP_I/II113.71.1e-3632116388
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       k+rls eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqn RAR+ktkqlE+dye+Lk++++ ++++ne+L++e   L+
  Eucgr.I02255.1.p  32 KKRLSLEQVKALEKSFEIGNKLEPERKIQLARALGLQPRQIAIWFQNWRARWKTKQLERDYEVLKKQFE-VHAQNEKLHAELLVLK 116
                       89******************************************************************8.7889999*99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.1E-152890IPR001356Homeobox domain
SuperFamilySSF466892.42E-183188IPR009057Homeodomain-like
CDDcd000861.37E-143287No hitNo description
PROSITE profilePS5007115.3863286IPR001356Homeobox domain
PfamPF000463.0E-143484IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-183493IPR009057Homeodomain-like
PRINTSPR000319.6E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000319.6E-56682IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSFSGADHNQ RSCGGGDDND LSDDGSQLLL GKKRLSLEQV KALEKSFEIG NKLEPERKIQ  60
LARALGLQPR QIAIWFQNWR ARWKTKQLER DYEVLKKQFE VHAQNEKLHA ELLVLKGRDT  120
NEAPSNLKKE IERSYWSNGS ENSSNINLDI SRTSVMNSPV SSSQFSNKHH FTSWRPSVMA  180
QQLHGSTR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02255.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029293.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT09e-54ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A059AQY51e-105A0A059AQY5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010029293.11e-112(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.12e-50homeobox protein 20