PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02368.1.p
Common NameEUGRSUZ_I02368, LOC104419675
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 186aa    MW: 20327.8 Da    PI: 6.1038
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02368.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-07433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  +  fC  ++  lC  C ++ H
  Eucgr.I02368.1.p  4 LCDACESAAAVVFCAADEAALCSACDDKVH 33
                      7*************************9998 PP
2zf-B_box29.21.9e-095291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Eucgr.I02368.1.p 52 DVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtH 91
                      5799**************************9996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
SMARTSM003365.0E-6147IPR000315B-box-type zinc finger
PfamPF006431.4E-5342IPR000315B-box-type zinc finger
CDDcd000211.00E-5345No hitNo description
SuperFamilySSF578452.15E-54887No hitNo description
SMARTSM003364.5E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445196IPR000315B-box-type zinc finger
PfamPF006438.9E-85291IPR000315B-box-type zinc finger
CDDcd000219.14E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDD KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGHKSAH SDDQALPLVD  120
QNDKRVQNQG PIVISGENHQ NHRPSSVEVP DADADADGHG KMDSKMIDLN MKPHRMHDQA  180
SYNEQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02368.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029710.11e-135PREDICTED: B-box zinc finger protein 18 isoform X2
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A059ASK21e-134A0A059ASK2_EUCGR; Uncharacterized protein
STRINGXP_010029709.11e-134(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-62DBB family protein