PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02368.2.p
Common NameEUGRSUZ_I02368
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 134aa    MW: 14590.9 Da    PI: 7.0174
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02368.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-07433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  +  fC  ++  lC  C ++ H
  Eucgr.I02368.2.p  4 LCDACESAAAVVFCAADEAALCSACDDKVH 33
                      7*************************9998 PP
2zf-B_box284.5e-095291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Eucgr.I02368.2.p 52 DVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtH 91
                      6799**************************9996655565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
SMARTSM003365.0E-6147IPR000315B-box-type zinc finger
PfamPF006437.7E-6342IPR000315B-box-type zinc finger
CDDcd000214.30E-5345No hitNo description
SuperFamilySSF578453.43E-54890No hitNo description
SMARTSM003364.5E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445196IPR000315B-box-type zinc finger
PfamPF006436.0E-85291IPR000315B-box-type zinc finger
CDDcd000213.20E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDD KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEVGHTIYCL YQHQALVRLF  120
KFEVSSFVVV SGA*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02368.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029709.19e-70PREDICTED: B-box zinc finger protein 18 isoform X1
SwissprotC0SVM52e-62BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A059ARR53e-92A0A059ARR5_EUCGR; Uncharacterized protein
STRINGXP_010029709.13e-69(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-50DBB family protein