PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02372.1.p
Common NameEUGRSUZ_I02372, LOC104419679
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 356aa    MW: 38374.4 Da    PI: 6.9227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.6e-19275308134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +
  Eucgr.I02372.1.p 275 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGR 308
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-7725353IPR016679Transcription factor, GATA, plant
SMARTSM004017.3E-15269323IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.78269305IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14270331No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14273306IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.08E-14274330No hitNo description
PfamPF003208.7E-17275308IPR000679Zinc finger, GATA-type
PROSITE patternPS003440275300IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MECVEAALKM SFRREMAARP FVRDETVWPA ASNSLNASSS DDFLVDELLD FSNDEGFVQA  60
HEKEEGEERN PKEGGGEGEG EGEGGERAAA KLISSASCSA EERFSAKTED FGPLPASELS  120
VPDDDLADLE WLSHFVDDSF SEFSSPLPAV FPAEKPRNPQ SHQNRSGPEA PAMDKPHFAT  180
PAQAKSRRSK RARTGGRVWS LGSPSLTDAS SSSCSSSSSS NSPASNWLAC TTPPARKSSE  240
PPENVAYSDR KPPVKKQKRP DQPAPGAAQP PARRCSHCGV QKTPQWRAGP LGAKTLCNAC  300
GVRFKSGRLF PEYRPACSPT FSSEMHSNHH RKVVEMRRKK EVPGQSGSAQ AVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02372.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029716.10.0PREDICTED: GATA transcription factor 5
TrEMBLA0A059ARS00.0A0A059ARS0_EUCGR; GATA transcription factor
STRINGXP_010029716.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-60GATA transcription factor 5