PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02376.1.p
Common NameEUGRSUZ_I02376, LOC104419682
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26375.7 Da    PI: 7.1795
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02376.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.1e-271059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +ien++nrqvt+skRrngi+KKA+EL vLCda+v+++++s + kl+ey+s
  Eucgr.I02376.1.p 10 KIENDTNRQVTYSKRRNGIFKKAHELTVLCDARVSILMLSGNKKLHEYIS 59
                      79**********************************************86 PP
2K-box84.62.1e-2871164194
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yqk+ g +l+++++ ++q+el+kLk+ ++n ++e+R++lG dL++Ls+ eL++Leq +e+s++++R++K+++l++q+++ +kk k+l+++ ++
  Eucgr.I02376.1.p  71 YQKALGIDLWTTHYDRMQEELRKLKEVNNNFRKEIRQILGHDLNELSYAELHSLEQTIESSVNSVRQRKYHVLKTQTDTHKKKVKALEHRYTE 163
                       78899999*******************************************************************************998777 PP

             K-box  94 L 94 
                       L
  Eucgr.I02376.1.p 164 L 164
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.586161IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002655.01E-36280No hitNo description
SuperFamilySSF554552.35E-35295IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2082164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.76484174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKIEIQK IENDTNRQVT YSKRRNGIFK KAHELTVLCD ARVSILMLSG NKKLHEYISP  60
TTTTKRMIDD YQKALGIDLW TTHYDRMQEE LRKLKEVNNN FRKEIRQILG HDLNELSYAE  120
LHSLEQTIES SVNSVRQRKY HVLKTQTDTH KKKVKALEHR YTELLLESGA TYEDLQYGLS  180
EDIEGDYESA VTNLSNHTGA SAMYALRLHP SDHDLSSEGH FVPDLSLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-14159159MEF2 CHIMERA
6byy_B3e-14159159MEF2 CHIMERA
6byy_C3e-14159159MEF2 CHIMERA
6byy_D3e-14159159MEF2 CHIMERA
6bz1_A3e-14159159MEF2 CHIMERA
6bz1_B3e-14159159MEF2 CHIMERA
6bz1_C3e-14159159MEF2 CHIMERA
6bz1_D3e-14159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02376.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029721.11e-169PREDICTED: floral homeotic protein DEFICIENS
SwissprotQ003J25e-90TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A059ARS41e-167A0A059ARS4_EUCGR; Uncharacterized protein
STRINGXP_010029721.11e-168(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]