PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02442.1.p
Common NameEUGRSUZ_I02442, LOC104419745
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 98aa    MW: 10923.3 Da    PI: 5.5745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-071458344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT+e  +l+ da + +  g   +W +Ia+ +g + + +++k ++
  Eucgr.I02442.1.p 14 TWTAEKNKLFEDALAVYEEGtldRWQRIANAVGGKTSVEEVKKHY 58
                      7********************************444677888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00511164IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-91366IPR009057Homeodomain-like
CDDcd001671.98E-51458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASNPALLTC PGSTWTAEKN KLFEDALAVY EEGTLDRWQR IANAVGGKTS VEEVKKHYEI  60
LQHDIDLIES DKVPLPQYKT SEDKLGNQHM SLKHSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-231281876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02442.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029804.17e-68PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1734e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A059AS102e-66A0A059AS10_EUCGR; Uncharacterized protein
STRINGXP_010029804.13e-67(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-26RAD-like 6