PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02518.1.p
Common NameEUGRSUZ_I02518
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 343aa    MW: 37953.5 Da    PI: 7.8547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02518.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13164211355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Eucgr.I02518.1.p 164 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 211
                       6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.329161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17164227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-13166215No hitNo description
SMARTSM003536.3E-14167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEVTTMRGLP DMGVEDSGFI NPWQMHSFDE LHTLPLAAAL GEHMQGFFPQ PNINFKASAD  60
ASNSVINRPV KQLKTNSWDS CRVDPVSTPQ SFSPSNVLSF VSSNFTNQSS VVKPKEEAIG  120
SKSVGNVSSD MLFPQGSFGN QNYVLKACHG GKRVSTNNSL SQTQDHIIAE RKRREKLSQR  180
FIALSALVPG LKKMDKASVL GDAIKYLKQL QERIKILEEQ TRKRSMESVV FVKKSQVFED  240
GMNSSTDENF SSGPCDELLP EVEARICDND VLLKVHCEKS KGVLEKIIGE VEKLHLTIIN  300
SSLMTFGTSA VDITILAQMN PEFCMPVKDL VKNLRTAFKS FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13165220863Transcription factor MYC2
5gnj_B7e-13165220863Transcription factor MYC2
5gnj_E7e-13165220863Transcription factor MYC2
5gnj_F7e-13165220863Transcription factor MYC2
5gnj_G7e-13165220863Transcription factor MYC2
5gnj_I7e-13165220863Transcription factor MYC2
5gnj_M7e-13165220863Transcription factor MYC2
5gnj_N7e-13165220863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02518.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718430.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0723e-63BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059ASU80.0A0A059ASU8_EUCGR; Uncharacterized protein
STRINGXP_010030892.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-65bHLH family protein