PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02578.1.p
Common NameEUGRSUZ_I02578
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 185aa    MW: 22102.3 Da    PI: 8.2269
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02578.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.66.4e-33181521128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                       lp+G+rF+Ptdeel++++L+++v g + +   +i+e+  ++k++Pw+Lp+       v+++e ew+f s+   k++++++  r+t sg Wk+t
  Eucgr.I02578.1.p  18 LPVGYRFRPTDEELINHFLRRHVLGYRDDP-CIIPETpFVHKFDPWHLPRlfrersIVRSKEAEWWFLSRLLFKTQKNSKYDRQTPSGHWKTT 109
                       799**********************99777.568888689*********65777765666888****************************** PP

               NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g++k++ +k +++l+g+ + Lvf +++ +++++t Wvmhey l
  Eucgr.I02578.1.p 110 GQEKKINAKsTNRLIGTMRNLVFIENEGSSAKETVWVMHEYCL 152
                       *******9877788***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3716174IPR003441NAC domain
PROSITE profilePS5100539.63618174IPR003441NAC domain
PfamPF023651.4E-2019152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPCLIPVDVF YEHIDCFLPV GYRFRPTDEE LINHFLRRHV LGYRDDPCII PETPFVHKFD  60
PWHLPRLFRE RSIVRSKEAE WWFLSRLLFK TQKNSKYDRQ TPSGHWKTTG QEKKINAKST  120
NRLIGTMRNL VFIENEGSSA KETVWVMHEY CLHDNYGANF LDQQKFVLCR LINKRDEFID  180
DQPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-241817815172Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02578.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718048.11e-134PREDICTED: protein NTM1-like 9
TrEMBLA0A059ASH61e-136A0A059ASH6_EUCGR; Uncharacterized protein
STRINGXP_010030909.11e-134(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.13e-32NAC domain containing protein 62