PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02593.1.p
Common NameEUGRSUZ_I02593
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 23832.6 Da    PI: 5.3685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02593.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.7e-21551551
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ++s  ++tf+kRrn ++KKA+ LS LCdaev +iifs tg+lyeyss
  Eucgr.I02593.1.p  5 SSSSDHITFAKRRNSLMKKAKDLSQLCDAEVGIIIFSCTGQLYEYSS 51
                      678889***************************************96 PP
2K-box57.75.1e-20811433698
             K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +l+GedL+ Ls+k++q+Le+qLe sl++iR +K++++++qi+el +k + +++en +L++k+
  Eucgr.I02593.1.p  81 GQLMGEDLSGLSVKDIQNLENQLEMSLSTIRLQKEQIMMDQINELHRKRNLVHQENIELQEKV 143
                       59**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.554153IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-12452IPR002100Transcription factor, MADS-box
PfamPF003197.9E-18649IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-22765IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-131530IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-133051IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.32547149IPR002487Transcription factor, K-box
PfamPF014866.0E-2080143IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNPHSSSSDH ITFAKRRNSL MKKAKDLSQL CDAEVGIIIF SCTGQLYEYS SSSMDSVIER  60
YNNLKREAQP ELDQPTVDAK GQLMGEDLSG LSVKDIQNLE NQLEMSLSTI RLQKEQIMMD  120
QINELHRKRN LVHQENIELQ EKVNLIDKEN SEFLECQIHR EGSSSSEANR FHVSYGINTG  180
DDTDIPIPSP SRRPSRRNRS ATPPVTTELA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02593.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029960.11e-119PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010029961.11e-119PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010029962.11e-119PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP498e-52MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A059ATD01e-153A0A059ATD0_EUCGR; Uncharacterized protein
STRINGXP_010029960.11e-119(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.22e-51AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]