PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00119.1.p

Common Name

EUGRSUZ_J00119, LOC104420989

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 344aa MW: 37894.2 Da PI: 5.467

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00119.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	142	200	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l+se+ Eucgr.J00119.1.p 142 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLTSEN 200 9*****************************************99988877777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	140	203	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-9	142	196	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-10	142	196	No hit	No description
SuperFamily	SSF57959	9.85E-11	142	193	No hit	No description
CDD	cd14703	3.55E-23	143	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MELPEPPNPP NPNPQIPAPR NPAMPQFHHR RARSEVGFRM PDDGDPFDNA ASGSFEDLGS 60 EDDLLSTYMD MDKIGDKLDG GPGSGPRLDN ADVVGGGGGE KGGRPRHRYS NSADGSSVLE 120 GIEAKKAMAP DKLAELWAVD PKRAKRILAN RQSAARSKER KARYISELER KVQTLQTEAT 180 TLSAQLTLFQ RDTTGLTSEN AELELRLQVM EQQAQLRDAL NEALKKEVER LKIATGEMMT 240 PTDTYNLEML QYPYSQPSFF PPQQQPRSVD FRNMQMPQFN MFHMNIAASG QSPTVPTHSH 300 GFSELLQHDS LGRLEGLEIS NRGSHLVKSE GSTISASESS STY*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MELPEPPNPP NPNPQIPAPR NPAMPQFHHR RARSEVGFRM PDDGDPFDNA ASGSFEDLGS  60
EDDLLSTYMD MDKIGDKLDG GPGSGPRLDN ADVVGGGGGE KGGRPRHRYS NSADGSSVLE  120
GIEAKKAMAP DKLAELWAVD PKRAKRILAN RQSAARSKER KARYISELER KVQTLQTEAT  180
TLSAQLTLFQ RDTTGLTSEN AELELRLQVM EQQAQLRDAL NEALKKEVER LKIATGEMMT  240
PTDTYNLEML QYPYSQPSFF PPQQQPRSVD FRNMQMPQFN MFHMNIAASG QSPTVPTHSH  300
GFSELLQHDS LGRLEGLEIS NRGSHLVKSE GSTISASESS STY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00119.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031087.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-110	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A059A9E0	0.0	A0A059A9E0_EUCGR; Uncharacterized protein
STRING	XP_010031087.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-105	bZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00119.1.p
Entrez Gene	104420989

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]