PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00175.1.p

Common Name

EUGRSUZ_J00175, LOC104421045

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 175aa MW: 19160.9 Da PI: 7.1348

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00175.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.7e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp +r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+++ Eucgr.J00175.1.p 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVCQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQTQ 98 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Eucgr.J00175.1.p 99 LAVAQAE 105 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MGGHSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNISKM LQELPVCQRA 60 DAVSSLVYEA SARVRDPVYG CVGAISYLQN QVSQLQTQLA VAQAEIMCFQ MQQDSAVMQL 120 PRMMDVPDDD RSSSPFLLPN NLTHFLNLSP ASSGNVTHDH PLKRESILGH DVVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00175.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031173.1	1e-127	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-69	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A059A9Y5	1e-125	A0A059A9Y5_EUCGR; Uncharacterized protein
STRING	XP_010031173.1	1e-126	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-72	LBD family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00175.1.p
Entrez Gene	104421045

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]