PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00189.1.p

Common Name

EUGRSUZ_J00189

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 211aa MW: 23025.8 Da PI: 8.3575

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00189.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	2	34	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++v+q+G+++W++I+ ++ gR++k+c++rw + Eucgr.J00189.1.p 2 KLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 34 79***************.*********985 PP
2	Myb_DNA-binding	53.5	5.4e-17	43	85	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v+a+k +G++ W+tIar ++ gRt++ +k++w++ Eucgr.J00189.1.p 43 SFTPLEDATIVEAHKVHGNK-WATIARLLP-GRTDNAIKNHWNST 85 69****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-17	1	41	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.903	1	35	IPR017930	Myb domain
CDD	cd00167	1.26E-9	2	33	No hit	No description
Pfam	PF00249	3.1E-11	2	34	IPR001005	SANT/Myb domain
SMART	SM00717	0.17	2	37	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.41E-24	15	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.019	36	90	IPR017930	Myb domain
SMART	SM00717	8.6E-14	40	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-22	42	89	IPR009057	Homeodomain-like
Pfam	PF00249	4.8E-14	43	85	IPR001005	SANT/Myb domain
CDD	cd00167	1.05E-11	43	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MKLVEQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPTVQ HRSFTPLEDA TIVEAHKVHG 60 NKWATIARLL PGRTDNAIKN HWNSTLRRKR PGEQSSMSSE SNSEKHPGRD NTAAESETDL 120 EIKRQCLRVL PDENSRDGEV RPKGPRTSLT LSPPGGGVVA ALEDDKAAPN QADGDQDPAS 180 TRSGDAKVAA ATAAMDDSCL VMIMKRMIAE E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	5e-34	1	89	16	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-33	1	89	70	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-33	1	89	70	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	6e-34	1	89	16	104	C-Myb DNA-Binding Domain
1msf_C	6e-34	1	89	16	104	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00189.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770027	4e-38	KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031187.1	1e-154	PREDICTED: myb-related protein A
TrEMBL	A0A059A9S4	1e-154	A0A059A9S4_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010031187.1	1e-154	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-46	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Eucgr.J00189.1.p