PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00190.1.p
Common NameEUGRSUZ_J00190, LOC104421058
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 270aa    MW: 29019.2 Da    PI: 8.1451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1377123354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+++E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +++++k+L
  Eucgr.J00190.1.p  77 KSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLASVIDHVKDL 123
                       68*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25674123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1577126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1177123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1477144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1180129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-982126No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4166212No hitNo description
CDDcd048731.04E-5167203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MENLNWLSEW SGEADWVHSD EQLNRGSYPI PSQAAMFNPI QVCDENFPWL IPIGGVMADD  60
RATSASASAS ASASVSKSHS QAEKRRRDRI NAQLATLRKL IPKSEKMDKA ALLASVIDHV  120
KDLKRKASEI SKSITILPSE VDEVIIDCED PELNKGGNDS GAVLIRVSIC CDDRPELLSE  180
LTRVIKGLKL TTVKADVASV GGRIKSVLIL CGDTADGGGG GDRGACLSSL KQSLKVVVSR  240
IACSSMAASN CRIRSKRQRF FLPCQSPLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3905712e-59AY390571.1 Eucalyptus leucoxylon clone EL13 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031188.10.0PREDICTED: transcription factor bHLH51
TrEMBLA0A059AAS90.0A0A059AAS9_EUCGR; Uncharacterized protein
STRINGXP_010031188.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-37bHLH family protein