PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00206.1.p
Common NameEUGRSUZ_J00206, LOC104421074
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-X1
Protein Properties Length: 876aa    MW: 97104.7 Da    PI: 8.3978
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.4e-06190208120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H+C  lCH+GpCp+Cpq
  Eucgr.J00206.1.p 190 CG-HSCLLLCHPGPCPSCPQ 208
                       **.****************8 PP
2zf-NF-X127.19e-09242261120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H+C+++CHeG+CppC++
  Eucgr.J00206.1.p 242 CGIHQCGEICHEGDCPPCRK 261
                       ******************85 PP
3zf-NF-X117.77.7e-06402420119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H C++ C+ G+CppC 
  Eucgr.J00206.1.p 402 CGRHACKRRCCDGDCPPCL 420
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.41E-571149No hitNo description
PROSITE patternPS01359077143IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.26E-4178226No hitNo description
PfamPF014220.0048190207IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0027190208IPR000967Zinc finger, NF-X1-type
CDDcd060083.05E-9232280No hitNo description
PfamPF014221.8E-5242260IPR000967Zinc finger, NF-X1-type
SMARTSM004382.7E-4242261IPR000967Zinc finger, NF-X1-type
CDDcd060089.44E-7285332No hitNo description
PfamPF014220.087295313IPR000967Zinc finger, NF-X1-type
SMARTSM004389.1E-4295314IPR000967Zinc finger, NF-X1-type
CDDcd060083.17E-8339388No hitNo description
PfamPF014220.02349368IPR000967Zinc finger, NF-X1-type
SMARTSM004380.56349369IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-7392440No hitNo description
PfamPF014227.1E-4402419IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0045402421IPR000967Zinc finger, NF-X1-type
CDDcd060082.75E-10419467No hitNo description
PfamPF014220.015429447IPR000967Zinc finger, NF-X1-type
SMARTSM004380.015429448IPR000967Zinc finger, NF-X1-type
SMARTSM0043864492507IPR000967Zinc finger, NF-X1-type
PfamPF0142216496506IPR000967Zinc finger, NF-X1-type
PfamPF0142286515524IPR000967Zinc finger, NF-X1-type
SMARTSM00438100515560IPR000967Zinc finger, NF-X1-type
PfamPF014220.15597607IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9597630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.68640658IPR000967Zinc finger, NF-X1-type
PfamPF0142222642657IPR000967Zinc finger, NF-X1-type
SMARTSM0043812703724IPR000967Zinc finger, NF-X1-type
PfamPF01422160704717IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MATPAVRPRP PAQVLSDSDS DSDNAAAPSG ARPLRHVDLS DSVFKSYLQF TGHTAATVDL  60
SKIQSFLASS SSGAVSCLIC LERIRPSDPT WSCSSLCFSV FHLLCIQSWA RQSLDAAAAR  120
AAVRLSIPAD KAAEAASWGC PKCRCEYSKT QIPKSYLCYC GKVENPPGDD PWILPHSCGE  180
LCNRPLRPLC GHSCLLLCHP GPCPSCPQLV EAECFCGSAR DVRRCGYKNF SCKKRCNKLL  240
DCGIHQCGEI CHEGDCPPCR KRGVYRCRCG KREEERDCCD RDFRCEVPCE KALGCGKHVC  300
SRGCHAGECG DCPLQGKRTC PCRKRVYEGM ACDVDAPLCG ATCNKTLSCS YHRCPERCHR  360
GPCVETCRIV VTKSCRCGSL KKEVPCFQDL SCERKCMRTR DCGRHACKRR CCDGDCPPCL  420
EKCDKRLRCK NHKCPSPCHR GACAPCPVMV TISCACGETQ FEVPCGTEMD QKPPRCRKPC  480
SITPLCRHAS ICKPHKCHYG ACPQCKLICE EEYPCGHRCK LRCHGPKPPP NPEFTVKPKK  540
KKFVHQSEYT PGSPCPPCPE LVWRSCVGQH VGAEKMMVCS QRTLFSCDNL CGNPLSCGNH  600
YCTKTCHALK SRSSTSSTTR GGESCEKCTL PCQKERTPEC PHPCPLRCHP GECASCKVLV  660
KRSCHCGAMV HVFECIYYNT LSGEEQMAVR SCGGPCHRKL PNCTHLCPET CHPGPCPSPE  720
KCGKKVTVRC ECQTLKKEWP CHNVQAAYLA ASRDPKDISK NQFGHGLLPC NSDCKSRMQV  780
VQSNLQQRKP KISEIEEPDP GKSAPKRRKR RERLQETKET STLQRIGSTM RWMLVCLAIV  840
VVVIAVSYYG YKGLLRLSDW MNEIDRQRQR GHPRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1804810PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00206.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031213.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A059A9U30.0A0A059A9U3_EUCGR; Uncharacterized protein
STRINGXP_010031213.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors