PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00391.1.p
Common NameEUGRSUZ_J00391
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 225aa    MW: 25797.7 Da    PI: 10.0098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00391.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.19e-084264123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C++Cgk F+r  nL+ H+r H
  Eucgr.J00391.1.p 42 HYCQICGKGFKRDANLRMHMRAH 64
                      68*******************99 PP
2zf-C2H210.80.0015170184620
                       TTEEESSHHHHHHHH CS
           zf-C2H2   6 CgksFsrksnLkrHi 20 
                       Cg++Fsrk+ L+ H 
  Eucgr.J00391.1.p 170 CGTTFSRKDKLMGHV 184
                       ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-64067No hitNo description
PfamPF138940.0014264No hitNo description
SMARTSM003550.00284264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.6324269IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-742103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM0035564100133IPR015880Zinc finger, C2H2-like
SMARTSM0035528138160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRESPQVGHQ KDEKPRAHHT LSGNSYDIIE LNAEDLLAKY THYCQICGKG FKRDANLRMH  60
MRAHGDEYKT SAALSNPMKN TDSNRCKAND EQERLRPKKY SCPQEGCRWN RKHPKFQPLK  120
SMICIKNHYK RSHCPKMFVC KRCNRKQFSV LSDLRTHEKH CGDAKWQCSC GTTFSRKDKL  180
MGHVALFVGH SPASSVDLMN PARLVQQKVA PTIMQLHGIA YDRG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00391.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031421.11e-171PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT244e-87STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A059ABF11e-169A0A059ABF1_EUCGR; Uncharacterized protein
STRINGXP_010031421.11e-170(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-89C2H2 family protein