PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00499.1.p

Common Name

EUGRSUZ_J00499, LOC104421306

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YB

Protein Properties

Length: 286aa MW: 30980.5 Da PI: 9.4799

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00499.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.4	1.7e-13	15	109	6	95
NF-YB 6 rflPianvsrimkkvlPa...nak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP + v r++k+ l ++ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f +++ pl++ l ++r+ Eucgr.J00499.1.p 15 EELPKTIVRRVVKEKLSRcsdDGDvsLHKDALLAFSESARIFIHYLSATANDICKESKRQTINADDVLKALEEMEFPEFMGPLRASLDEFRKQ 107 57888899999999886422244411569999999********************************************************87 PP NF-YB 94 eg 95 ++ Eucgr.J00499.1.p 108 NA 109 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-33	13	147	IPR009072	Histone-fold
Pfam	PF00808	4.5E-10	16	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.71E-26	17	134	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEAAAAAAKV VGEAEELPKT IVRRVVKEKL SRCSDDGDVS LHKDALLAFS ESARIFIHYL 60 SATANDICKE SKRQTINADD VLKALEEMEF PEFMGPLRAS LDEFRKQNAG KKERAKAKES 120 MKKKMEGEPS QTKGDGEREQ NGSTSNGTEE ESGAVVKDKA KAKESTKRKM EGEPSQAKGD 180 GERKKNGGTS NGTEVESITV VKDKAKAKES TKRKTEGEPS QAKGDGERKK NGGPSNDNEE 240 ESGTVVKDKA KAKDLTKRKM EGEPSQTKEG GKRKKNEGIS KGTED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	274	KRKMEGEPSQTKEGGKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00499.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031521.1	0.0	PREDICTED: DNA polymerase epsilon subunit D
TrEMBL	A0A059A9S3	0.0	A0A059A9S3_EUCGR; Uncharacterized protein
STRING	XP_010031521.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-44	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Eucgr.J00499.1.p
Entrez Gene	104421306