PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00520.1.p
Common NameEUGRSUZ_J00520
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 240aa    MW: 27035.5 Da    PI: 6.2947
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.61.4e-4151362128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       p GfrF Pt+eel+++yL+k++eg+   +l ++i+ +diy +ePw+Lp+     +++++k+w+fF++ ++++a+g r++r+t+ gyWkatg+ 
  Eucgr.J00520.1.p   5 PTGFRFYPTEEELISFYLHKQLEGSLqDRLLRIIPVLDIYATEPWNLPElsgeLCREDKKQWFFFAPMQEREARGGRPSRSTAMGYWKATGSP 97 
                       89*********************99845567789*************9656754455778********************************* PP

               NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s++++++g+kk+++fy g+ap+g+kt+W ++eyr+
  Eucgr.J00520.1.p  98 GYIYSSDNKVIGMKKSMIFYVGKAPTGTKTKWKLNEYRA 136
                       *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-443168IPR003441NAC domain
PROSITE profilePS5100545.6134169IPR003441NAC domain
PfamPF023652.9E-205135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEDHPTGFRF YPTEEELISF YLHKQLEGSL QDRLLRIIPV LDIYATEPWN LPELSGELCR  60
EDKKQWFFFA PMQEREARGG RPSRSTAMGY WKATGSPGYI YSSDNKVIGM KKSMIFYVGK  120
APTGTKTKWK LNEYRAAEII SPPNSNSASS SMPKFRLRQE FALCRVYIVS GSSRAFDRRP  180
PELMAGETIL GGHGGGTSGG SASSSRPVVE NYAGISSDME TTSMDIEEPI WDWEQLNWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-35517418170NO APICAL MERISTEM PROTEIN
1ut4_B6e-35517418170NO APICAL MERISTEM PROTEIN
1ut7_A6e-35517418170NO APICAL MERISTEM PROTEIN
1ut7_B6e-35517418170NO APICAL MERISTEM PROTEIN
4dul_A6e-35517418170NAC domain-containing protein 19
4dul_B6e-35517418170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034225.11e-178PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR37e-87NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059A9U71e-177A0A059A9U7_EUCGR; Uncharacterized protein
STRINGXP_010034225.11e-178(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-87NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]