PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00521.1.p

Common Name

EUGRSUZ_J00521

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 170aa MW: 18876.4 Da PI: 10.2005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00521.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.2	4e-20	3	65	66	128
NAM 66 kkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++a+g r++r+t+ gyWkatg+ +v+s++++++g+kk++vfy g+ap+g+kt+W ++eyr+ Eucgr.J00521.1.p 3 ERQARGGRPSRSTAVGYWKATGSPCQVYSSENKVIGMKKSMVFYVGKAPTGRKTKWKLNEYRA 65 567899*******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.656	1	98	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-20	4	97	IPR003441	NAC domain
Pfam	PF02365	4.9E-8	9	64	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MQERQARGGR PSRSTAVGYW KATGSPCQVY SSENKVIGMK KSMVFYVGKA PTGRKTKWKL 60 NEYRAIEIIS PPAPNSSSSS VPMFRLRHEF TLCRVYVVSG SSRAFDRRPL KLVARETIQD 120 GDGGGSSSGE SASPSGSVIE NNVGISHFMK TISMEKEEPI WDWEQFNWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	8	103	86	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	8	103	86	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	8	103	86	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	8	103	86	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-16	8	103	89	173	NAC domain-containing protein 19
3swm_B	1e-16	8	103	89	173	NAC domain-containing protein 19
3swm_C	1e-16	8	103	89	173	NAC domain-containing protein 19
3swm_D	1e-16	8	103	89	173	NAC domain-containing protein 19
3swp_A	1e-16	8	103	89	173	NAC domain-containing protein 19
3swp_B	1e-16	8	103	89	173	NAC domain-containing protein 19
3swp_C	1e-16	8	103	89	173	NAC domain-containing protein 19
3swp_D	1e-16	8	103	89	173	NAC domain-containing protein 19
4dul_A	1e-16	8	103	86	170	NAC domain-containing protein 19
4dul_B	1e-16	8	103	86	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00521.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034224.1	1e-85	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-50	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AAM4	1e-121	A0A059AAM4_EUCGR; Uncharacterized protein
STRING	XP_010034224.1	4e-85	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-49	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Eucgr.J00521.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]