PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00587.4.p

Common Name

EUGRSUZ_J00587

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 184aa MW: 20238.7 Da PI: 10.8936

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00587.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	190	1.2e-58	16	155	22	170
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 + vsvPs+sl+++vtvrCGhC +llsvn+a a+q + + +++ e++ + + +s ++++s++ ss+ e + e+pr+ p Eucgr.J00587.4.p 16 MQVSVPSSSLYTMVTVRCGHCGNLLSVNMAGAVQSAPLPDT----SQQPSSENMARGSGSSSS-SRPNNNTSNKFSSF---EPIEAEAPRMTP 100 679****************************99999986....333344444433333333.33334444444442...456789999999 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.J00587.4.p 101 -IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 .9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-58	16	155	IPR006780	YABBY protein
SuperFamily	SSF47095	1.09E-8	96	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-5	103	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGFLVFTRRK NKRRSMQVSV PSSSLYTMVT VRCGHCGNLL SVNMAGAVQS APLPDTSQQP 60 SSENMARGSG SSSSSRPNNN TSNKFSSFEP IEAEAPRMTP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQGKADQAIA GDHQGTHKSH 180 GFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00587.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ694015	2e-61	FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031585.1	1e-122	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	5e-67	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A059AAW8	1e-134	A0A059AAW8_EUCGR; Uncharacterized protein
STRING	XP_010031584.1	1e-107	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00587.4.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]