PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00587.6.p

Common Name

EUGRSUZ_J00587, LOC104421368

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 159aa MW: 17336.3 Da PI: 10.3632

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00587.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	174.8	5.4e-54	1	130	34	170
YABBY 34 vvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvP 126 +vtvrCGhC +llsvn+a a+q + + + +++ e++ + + +s ++++s++ ss+ e + e+pr+ p irPPekrqrvP Eucgr.J00587.6.p 1 MVTVRCGHCGNLLSVNMAGAVQSAPLPDT--SQKQQPSSENMARGSGS-SSSSRPNNNTSNKFSSF---EPIEAEAPRMTP-IRPPEKRQRVP 86 69*****************99999996..33333444444443333.33334444444555543...467889999999.9****** PP YABBY 127 saynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 saynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.J00587.6.p 87 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 130 ****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-54	1	130	IPR006780	YABBY protein
SuperFamily	SSF47095	8.12E-9	71	123	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-5	78	124	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MVTVRCGHCG NLLSVNMAGA VQSAPLPDTS QKQQPSSENM ARGSGSSSSS RPNNNTSNKF 60 SSFEPIEAEA PRMTPIRPPE KRQRVPSAYN RFIKEEIQRI KASNPDISHR EAFSTAAKNW 120 AHFPHIHFGL KLDGNKQGKA DQAIAGDHQG THKSHGFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00587.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ694015	2e-61	FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031584.1	1e-116	PREDICTED: putative axial regulator YABBY 2 isoform X1
Refseq	XP_018720022.1	1e-116	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-63	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A059AA64	1e-114	A0A059AA64_EUCGR; Uncharacterized protein
STRING	XP_010031584.1	1e-115	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-60	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00587.6.p
Entrez Gene	104421368

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]