PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00701.1.p

Common Name

EUGRSUZ_J00701, LOC104421472

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 523aa MW: 58755.8 Da PI: 8.3646

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00701.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +R+ t+ ql +Le+++++++yp++e++ +LA+++gLte+q++ WF+ rR k+k+ Eucgr.J00701.1.p 19 NRRRFKTPAQLAALESFYNEQKYPTEEMKSQLAEQIGLTEKQISGWFCHRRLKDKR 74 6778889***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-20	3	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	15	75	IPR001356	Homeobox domain
SMART	SM00389	3.7E-18	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-18	17	83	IPR009057	Homeodomain-like
CDD	cd00086	1.80E-16	18	74	No hit	No description
Pfam	PF00046	1.9E-16	19	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MEESSEAHSA EEKASSEKNR RRFKTPAQLA ALESFYNEQK YPTEEMKSQL AEQIGLTEKQ 60 ISGWFCHRRL KDKRLLREEV YADGRQDRSS GVVQDRGSGL RQDSCGSTKQ GDRRLFDPRE 120 VESRRLYGQN SPSADLTFEP KSQYAGNLAP LDDTSSGSSS ALQDGFGSQG TDKYDNCRPL 180 AKHEGISSFH RKSTNDMRYR PSGYLKVKGE IENAAITAVK RQLGRHYRED GPLLGIEFDP 240 LPPGAFESPL GESTYGPRYV EDPSLPQSPE IYGIQKQPSL NTQHEEYNSK LSPQKAYEEG 300 EDFSTVDRLD YSDYRPHNQF KQRYTPSSQI GDLGGWKSSV HMQEYPTGDA YAYNNGRRSG 360 LTSKHAAEGM RSDFAFDHLH TTSAKITSRK RESRLNDYDA IHAEFVQNSE IVRPRPSNLV 420 LQHSESFNAG EGGPSKRILK EEKRYRERGT AAGYIEPLRE KMRPPKEMAS AKRVRTKFPQ 480 QDFVTKASAV MPPWKNQTKG SAAQMPSSLS NDEAADTSSS LG*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MEESSEAHSA EEKASSEKNR RRFKTPAQLA ALESFYNEQK YPTEEMKSQL AEQIGLTEKQ  60
ISGWFCHRRL KDKRLLREEV YADGRQDRSS GVVQDRGSGL RQDSCGSTKQ GDRRLFDPRE  120
VESRRLYGQN SPSADLTFEP KSQYAGNLAP LDDTSSGSSS ALQDGFGSQG TDKYDNCRPL  180
AKHEGISSFH RKSTNDMRYR PSGYLKVKGE IENAAITAVK RQLGRHYRED GPLLGIEFDP  240
LPPGAFESPL GESTYGPRYV EDPSLPQSPE IYGIQKQPSL NTQHEEYNSK LSPQKAYEEG  300
EDFSTVDRLD YSDYRPHNQF KQRYTPSSQI GDLGGWKSSV HMQEYPTGDA YAYNNGRRSG  360
LTSKHAAEGM RSDFAFDHLH TTSAKITSRK RESRLNDYDA IHAEFVQNSE IVRPRPSNLV  420
LQHSESFNAG EGGPSKRILK EEKRYRERGT AAGYIEPLRE KMRPPKEMAS AKRVRTKFPQ  480
QDFVTKASAV MPPWKNQTKG SAAQMPSSLS NDEAADTSSS LG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00701.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031727.1	0.0	PREDICTED: uncharacterized protein LOC104421472 isoform X1
TrEMBL	A0A059AB88	0.0	A0A059AB88_EUCGR; Uncharacterized protein
STRING	XP_010031727.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	8e-20	homeobox-1

Link Out ? help Back to Top
Phytozome	Eucgr.J00701.1.p
Entrez Gene	104421472