PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00785.1.p

Common Name

EUGRSUZ_J00785, LOC104421532

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 451aa MW: 51008.8 Da PI: 6.1777

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00785.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.4	3.4e-22	118	212	1	85
trihelix 1 rWtkqevlaLiearr......emeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ee +rr++ +kk++W+ vsk m +rg+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d Eucgr.J00785.1.p 118 KWTDEVVRLLIAVVAcvgddgIPEEGFRRKSgilQKKGKWKTVSKIMISRGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCKVVENPSLMD 210 7************4444443344444443788********************************************6699999999998 PP trihelix 84 ql 85 ++ Eucgr.J00785.1.p 211 SM 212 88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-20	116	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MDSSGLGGGF LSVSSGGLLD LESSMHRHQQ THLSHSSMSH RQPMNLMTGL ESGSQHVGLI 60 EVGGMTARGT PTNFGKGKAA VGASNAGNVS EEDEPSFDDG TGDSSGKSKK GSPWHRMKWT 120 DEVVRLLIAV VACVGDDGIP EEGFRRKSGI LQKKGKWKTV SKIMISRGCH VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTSC KVVENPSLMD SMPHLSAKAK EDVRKILSSR HLFYKEMCAY 240 HNGQKIPNCQ DFDLQAYSLH LEKGSKDDNA SDEEAEDNED DEDEDDDDGL DDEDDIGVGG 300 CRGRVCDPNK RKMVEEDGPS WPQCSRHEGL QFEMADIFQD PSKTPWERKE WMKRQMLQLQ 360 EQRANIQAQS FELEKQRFKW LRYCSKKNRE LERLRLENER MKLENERGFL ELKHRDLEIN 420 SRRSEASFDP TSHGIDRIQG RDHIDLSRHQ *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MDSSGLGGGF LSVSSGGLLD LESSMHRHQQ THLSHSSMSH RQPMNLMTGL ESGSQHVGLI  60
EVGGMTARGT PTNFGKGKAA VGASNAGNVS EEDEPSFDDG TGDSSGKSKK GSPWHRMKWT  120
DEVVRLLIAV VACVGDDGIP EEGFRRKSGI LQKKGKWKTV SKIMISRGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTSC KVVENPSLMD SMPHLSAKAK EDVRKILSSR HLFYKEMCAY  240
HNGQKIPNCQ DFDLQAYSLH LEKGSKDDNA SDEEAEDNED DEDEDDDDGL DDEDDIGVGG  300
CRGRVCDPNK RKMVEEDGPS WPQCSRHEGL QFEMADIFQD PSKTPWERKE WMKRQMLQLQ  360
EQRANIQAQS FELEKQRFKW LRYCSKKNRE LERLRLENER MKLENERGFL ELKHRDLEIN  420
SRRSEASFDP TSHGIDRIQG RDHIDLSRHQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00785.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031815.1	0.0	PREDICTED: uncharacterized protein LOC104421532
TrEMBL	A0A059ABT0	0.0	A0A059ABT0_EUCGR; Uncharacterized protein
STRING	XP_010031815.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-72	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Eucgr.J00785.1.p
Entrez Gene	104421532