PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00796.1.p

Common Name

EUGRSUZ_J00796, LOC104421545

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 397aa MW: 42693.9 Da PI: 6.5353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00796.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	330	375	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Eucgr.J00796.1.p 330 SIAERVRRTKISERIRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 375 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.383	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-16	326	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-12	328	379	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.9E-16	329	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-14	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-10	330	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MESDLQQQRD GRSSNYQPQQ QPNNNNSGLS RFRSAPSSYF KNLLDSCEEF LNRPSSPESE 60 RIFARLMSSS PASGGGGGGG GGNVFGPPMK TEAEVLQPER SSFSSAASSQ NFYQGSSQLQ 120 NQSMDYKVVG SMGMDRSASL KTGNSNSSNL IRQSSSPAGL FSNTNIDGYS ASRSIEDFVG 180 SGAAGESSFS PASRFSNRMN FSSGPPPSSS GKMSPITELG KKSMDINSPE GGDFSEGHGN 240 DYITGFPIGS WDDPVGLSDN FNRGDEDEKG FLGLNASETE EGKGRVPGLL AHHLSLPSKS 300 SADVDKFLQL QDSVPCKVRA KRGFATHPRS IAERVRRTKI SERIRKLQDL VPNMDKQTNT 360 ADMLDLAVDY IKELQGQVKT LSDDRAKCTC PSKQQL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MESDLQQQRD GRSSNYQPQQ QPNNNNSGLS RFRSAPSSYF KNLLDSCEEF LNRPSSPESE  60
RIFARLMSSS PASGGGGGGG GGNVFGPPMK TEAEVLQPER SSFSSAASSQ NFYQGSSQLQ  120
NQSMDYKVVG SMGMDRSASL KTGNSNSSNL IRQSSSPAGL FSNTNIDGYS ASRSIEDFVG  180
SGAAGESSFS PASRFSNRMN FSSGPPPSSS GKMSPITELG KKSMDINSPE GGDFSEGHGN  240
DYITGFPIGS WDDPVGLSDN FNRGDEDEKG FLGLNASETE EGKGRVPGLL AHHLSLPSKS  300
SADVDKFLQL QDSVPCKVRA KRGFATHPRS IAERVRRTKI SERIRKLQDL VPNMDKQTNT  360
ADMLDLAVDY IKELQGQVKT LSDDRAKCTC PSKQQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00796.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031833.1	0.0	PREDICTED: transcription factor bHLH130 isoform X3
TrEMBL	A0A059AAT3	0.0	A0A059AAT3_EUCGR; Uncharacterized protein
STRING	XP_010031830.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	1e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00796.1.p
Entrez Gene	104421545