PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00892.1.p
Common NameEUGRSUZ_J00892
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 322aa    MW: 35812.9 Da    PI: 8.1229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00892.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-125395246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Eucgr.J00892.1.p 53 GEFSDEEDRIIFSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 95
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.577146IPR017877Myb-like domain
SMARTSM00717211348IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-2132101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-113258IPR009057Homeodomain-like
PROSITE profilePS5129422.21747101IPR017930Myb domain
SMARTSM007175.9E-135199IPR001005SANT/Myb domain
PfamPF002491.5E-115395IPR001005SANT/Myb domain
CDDcd001671.22E-95497No hitNo description
Gene3DG3DSA:1.10.10.601.5E-185998IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EGLQAQRKAG LKRCGKSCRL RWLNYLRPNI KHGEFSDEED  60
RIIFSLFATI GSRWSIIAAQ LPGRTDNDIK NYWNTKLKKK LMGMIPPSQR KLMIPPFSSS  120
TPNNYPITPS SQLSSLPSSL YRDCTASFYN PPSNNNRPSI TNLEFSSSLP SSTTLLTDSS  180
SLFQAQEGGF LCPIQYDSSV KDINNNNHNN MLVFGSSERS DCSYGREMGI KQEQLDFRGY  240
IPNGFEGNNN VQRVESSYSN SGSCDNANHL SGCFGGNDNS VLDYDLEDVK RLISSNSSSS  300
NSLLFTDESN KIGDQRALYY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141017108B-MYB
1mse_C2e-22141014105C-Myb DNA-Binding Domain
1msf_C2e-22141014105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00892.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690615.15e-90transcription factor RAX2-like
TrEMBLA0A059ACH10.0A0A059ACH1_EUCGR; Uncharacterized protein
STRINGcassava4.1_030463m6e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-59myb domain protein 36