PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01041.1.p
Common NameEUGRSUZ_J01041
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 331aa    MW: 36871.8 Da    PI: 8.3823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012139161123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++F++   L  H  +H
  Eucgr.J01041.1.p 139 YECKTCSRTFPSFQALGGHRASH 161
                       99**********99999998887 PP
2zf-C2H211.80.00076224246123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  Eucgr.J01041.1.p 224 HECSICGAEFASGQALGGHMRRH 246
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-8138161No hitNo description
PfamPF139124.7E-13138163IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93139166IPR007087Zinc finger, C2H2
SMARTSM003550.11139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576672.54E-8219246No hitNo description
PfamPF139121.1E-12223248IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577224246IPR007087Zinc finger, C2H2
SMARTSM003550.016224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
WWWWWRVLGG WDYAGRIAKR KRTKRQRVQS PYRFGIASSP SDNDDSSRDH IVVNNNSHAI  60
VGANNHNFSP ASSTEVEGMS TLEEEEDMAN CLILLAQGHS KLPQKQAILE QDVADLKFNS  120
KRYLEASTGG GNKIGYYVYE CKTCSRTFPS FQALGGHRAS HKKPNKATAE DKKPQHQFGT  180
SSSEEEESAQ FKRHNVTSSA LSLQLSGQNV LFGSSFSNKH PKVHECSICG AEFASGQALG  240
GHMRRHRTPA GTNMGLSLNP MTSESEESPA RARNNAVSLD LDLNLPAPDE DDHNDHRFPL  300
SSKKQKQQQE QQENRSRLVF SVPALVDCRY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032134.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A059ACS30.0A0A059ACS3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010032134.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-57C2H2 family protein