PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01231.1.p
Common NameEUGRSUZ_J01231
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 288aa    MW: 32026.1 Da    PI: 7.7775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01231.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-055173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H+++H
  Eucgr.J01231.1.p 51 YSCSFCNREFRSAQALGGHMNVH 73
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-64877No hitNo description
PROSITE profilePS5015711.5525178IPR007087Zinc finger, C2H2
SMARTSM003550.00285173IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-65174IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKKAQYSMST AGIHHLLKSH YGQARTPIGG DSWEEKAFAE DFGCVWPPRS YSCSFCNREF  60
RSAQALGGHM NVHRRDRARL KQSALSNQSD EILSQTRKPG LSGIVLPYEL QSEAFSLLDH  120
KNDLNSSNYF TPSLSSKVLG LPSSDKKLPR PEELACSPYH SVLVKEGQKV LFDPVTMKVH  180
CSSDKDRLEM QKILREDEHE CFDSSSSETD LSVGLSSNFG RRPPATSSCS NEAINLKRPK  240
TSESSWLTVL NPCSSIGGYP RKSDVQIGLK VSSMEDLDLE LRLGDPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124673229superman protein
2l1o_A1e-124673229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01231.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034352.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A059AEF40.0A0A059AEF4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034352.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-26zinc-finger protein 10