PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01242.1.p
Common NameEUGRSUZ_J01242, LOC104421919
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 721aa    MW: 80550.9 Da    PI: 4.7183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01242.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.12.4e-1123467171374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+av+ +d   a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+s+++kal +++ s    +++l+a++l+  ++P++k+
  Eucgr.J01242.1.p 346 LRTLLTLCAQAVTMDDRGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGSQIFKALMARPRS---AVDVLKAYHLLLTICPFMKL 435
                       5789***************************************************************999...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       sh   N++Il+ + ++ ++HiiDf+i +G+QWp L++ L+s p+gpp+lRiT+++ p++g    e +eetg+rL ++A++++vpf+fn+ ++k
  Eucgr.J01242.1.p 436 SHYFSNKTILNVAREAPKLHIIDFGILYGFQWPGLIERLSSSPSGPPELRITAIDLPQPGfkPDEIVEETGRRLVSYAKTFNVPFKFNA-IVK 527
                       ***********************************************************9999999***********************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        ++++++eeL+++++E l+Vn++++ h++ld++v  es+rd vL+l+k+++P+v++ +  + +h+ + F+ rf eal ++sa+fd lea++pr
  Eucgr.J01242.1.p 528 GWDAIKVEELNIHSDEILVVNCIHRFHNILDDTVLAESPRDVVLNLIKKMNPDVFIQAVVNGNHGVPFFVSRFREALFHFSAVFDILEATVPR 620
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++ er  +E+e+lg++++nv+aceg++r+er et+++ + r  +aGF+++pl+++ ++ ak  l+ ++ + +++ee+ ++l++gWk+r ++++
  Eucgr.J01242.1.p 621 DDPERLLLEQEILGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDLVSLAKDKLKSCYHKDFEIEEDGQWLLQGWKGRIIYAL 713
                       ********************************************************************889********************** PP

              GRAS 371 SaWr 374
                       S Wr
  Eucgr.J01242.1.p 714 STWR 717
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.066320697IPR005202Transcription factor GRAS
PfamPF035148.1E-110346717IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDRPPDKLDN FIDGYVLVDG DDAAFSILRE DDLVSELTID DTFNDFTYSC TCAPHLGADL  60
GKEPAEDYDF SDAALKYINQ MLMEEDIEEK SVACHEASAI EAAEKSFYEV IGERYPPAAD  120
QHPSPNQTNE SSCGGSDSVI KLVESEPNYE SEEHTVLTTV SQSISSSVAQ SLDDVRVGIS  180
TAGHAESPVN AISLSELIGS ESVMQFKGNS EETRESLAFG NEILVDPERG EFSFNEQTEE  240
PTSLVPNEET DENMFANLGG NRGKKNPLQE DVNLEVGRMS KYLSVYTEST VRSEIFDMVL  300
LNPKESEATL REALRNMMQN GKSKVPNEGK ARGKKQGRRK RDVVDLRTLL TLCAQAVTMD  360
DRGSAGELLK QIRRHASPTG DGMQRMAHYF ANGLEARLAG SGSQIFKALM ARPRSAVDVL  420
KAYHLLLTIC PFMKLSHYFS NKTILNVARE APKLHIIDFG ILYGFQWPGL IERLSSSPSG  480
PPELRITAID LPQPGFKPDE IVEETGRRLV SYAKTFNVPF KFNAIVKGWD AIKVEELNIH  540
SDEILVVNCI HRFHNILDDT VLAESPRDVV LNLIKKMNPD VFIQAVVNGN HGVPFFVSRF  600
REALFHFSAV FDILEATVPR DDPERLLLEQ EILGKQAMNV IACEGSDRIE RPETYKSSHV  660
RNLRAGFRQL PLDKDLVSLA KDKLKSCYHK DFEIEEDGQW LLQGWKGRII YALSTWRPDC  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4635371826380Protein SCARECROW
5b3h_A3e-4635371825379Protein SCARECROW
5b3h_D3e-4635371825379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01242.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032388.10.0PREDICTED: scarecrow-like protein 9 isoform X1
TrEMBLA0A059ACH20.0A0A059ACH2_EUCGR; Uncharacterized protein
STRINGXP_010032388.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein