PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01466.1.p
Common NameEUGRSUZ_J01466
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 308aa    MW: 35211.6 Da    PI: 9.7623
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01466.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.33.8e-44562162135
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eaess 78 
                       + kkdrh ki+T++g+RdRRvRls+e+ +rfFdLqd+LGfdk+skt+eWLl+++ +aik+l++                 s s+sec +a+s 
  Eucgr.J01466.1.p  56 PMKKDRHRKICTAQGLRDRRVRLSIEISRRFFDLQDMLGFDKASKTLEWLLTKSRKAIKDLAKGkrkdlvlrpvedekgWSCSSSECdQAVSA 148
                       679*************************************************************89999999887777644444566333333 PP

               TCP  79 sssasnsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                        +  +    g               ++  + + +  s++++   + lakesrakararar rtr km+++n 
  Eucgr.J01466.1.p 149 GVVIA----GngivpvddkrsvpvgDNDYQGMFKMVSSNRDGGLHVLAKESRAKARARARARTRAKMSNDNP 216
                       33333....033446777777889866666664555555555589***********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3757213IPR005333Transcription factor, TCP
PROSITE profilePS5136934.85258116IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.102193210IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
ELINQTILFH HQMPFTDHHF FFPNNHIYPV ITEAPIDIRS PKNGAKVSSS NPANKPMKKD  60
RHRKICTAQG LRDRRVRLSI EISRRFFDLQ DMLGFDKASK TLEWLLTKSR KAIKDLAKGK  120
RKDLVLRPVE DEKGWSCSSS ECDQAVSAGV VIAGNGIVPV DDKRSVPVGD NDYQGMFKMV  180
SSNRDGGLHV LAKESRAKAR ARARARTRAK MSNDNPKLDH HDQFKKLCPD SQASSEEKKS  240
NHYVQAQADH QAFSEHQEEV DIEQSVLINR KLKQSSVIIN NYQKNLDNDN NSQFYYHDVA  300
HQNWDINP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195204RAKARARARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01466.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719266.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A059ADX70.0A0A059ADX7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034424.11e-178(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-28TCP family protein