PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J01563.1.p

Common Name

EUGRSUZ_J01563, LOC104423708

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 197aa MW: 22557.7 Da PI: 8.6994

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J01563.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.2e-05	37	73	5	43
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaei 43 h Er RR++ + +++ L lP+ ++ K+s +++ Eucgr.J01563.1.p 37 HMLSERMRREKQKRSYSALLAELPHgT---QNDKNSIVQT 73 6678*********************66...8888877666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.74E-9	32	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.283	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-5	37	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPNPGNNMNK RVMEFLRRSW AEPSQIQEFD RERGFRHMLS ERMRREKQKR SYSALLAELP 60 HGTQNDKNSI VQTARMRIKE LVKYKQELER QNGELKSGLN EKSGGDKAGG TKIRVKIANP 120 TSGIDSMLEV LKCLDNMELK ATAIQTQCSA DQLFAVIEVE NEIEAAHVEN VIQWTLLEAE 180 RKLHPNSYEG KMDWLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	49	MRREKQKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J01563.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034468.1	1e-145	PREDICTED: transcription factor bHLH92
TrEMBL	A0A059AE57	1e-144	A0A059AE57_EUCGR; Uncharacterized protein
STRING	XP_010034468.1	1e-145	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	6e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J01563.1.p
Entrez Gene	104423708