PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J01756.1.p

Common Name

EUGRSUZ_J01756

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 113aa MW: 12747.8 Da PI: 8.6601

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J01756.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.9	4.3e-23	13	70	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+W+KYGqK +++ rsYY+C a+C++kk+ e s+++p + ++Yeg Hnh+ Eucgr.J01756.1.p 13 QDGYEWKKYGQKFIRNIGKFRSYYKCQRAECNAKKRAEWSETEPGDLRVVYEGAHNHS 70 7********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-23	5	70	IPR003657	WRKY domain
PROSITE profile	PS50811	20.208	7	72	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-21	8	70	IPR003657	WRKY domain
SMART	SM00774	1.3E-19	12	71	IPR003657	WRKY domain
Pfam	PF03106	4.2E-20	13	69	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MDREASSRLQ LPQDGYEWKK YGQKFIRNIG KFRSYYKCQR AECNAKKRAE WSETEPGDLR 60 VVYEGAHNHS SSLQDQSGSS QSGASSTSAN QYNLLNQVFG DNPPSDYRRS GD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-14	4	69	9	74	Probable WRKY transcription factor 4
2lex_A	3e-14	4	69	9	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J01756.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075800.1	5e-42	probable WRKY transcription factor 45
TrEMBL	A0A059AF13	5e-78	A0A059AF13_EUCGR; Uncharacterized protein
STRING	XP_006488951.1	2e-36	(Citrus sinensis)
STRING	XP_006445572.1	2e-36	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23988	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-15	WRKY DNA-binding protein 23

Link Out ? help Back to Top
Phytozome	Eucgr.J01756.1.p