PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02044.1.p
Common NameEUGRSUZ_J02044, LOC104422487
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 764aa    MW: 86090.5 Da    PI: 6.7057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1123917601373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avss+d + a+ +L +++++asp+gd  qRla+yf+++L+arl +++s++y+al +++ts    ++ l+a++++  ++P+ ++
  Eucgr.J02044.1.p 391 LRTLLILCAQAVSSDDRRTANDYLRQIRQHASPSGDGSQRLAHYFANGLEARLEGTGSQVYAALGSKKTS---AVDLLKAYHVYRTAFPFQRV 480
                       5789************************************************************999999...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++    +I+  +e+++++HiiDf+is+G+QWpa++  L+ R++gpp+lRiTg++ p+ g   +e+++etg+ La+f+++++vpfe+n+ +a+
  Eucgr.J02044.1.p 481 ANMFVGDMIMHLAEKATTLHIIDFGISNGFQWPAFISRLSRRTGGPPKLRITGIELPQRGfrPAEKVQETGRHLAQFCKRFNVPFEYNA-IAQ 572
                       **********************************************************99*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++ ++++++gE+++Vn +++ ++llde+v l+++rd+vL+l+++++P+++v +  + + +++ F++rf eal +ysalfd+++++l+r
  Eucgr.J02044.1.p 573 KWDTIKIGDIKIRNGETIVVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFGAPFFVTRFREALFHYSALFDAFDTNLGR 665
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +++ r  +E+e++gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl+  ++k  ++ l+++++d + v+e+ +++++gWk+r L++ 
  Eucgr.J02044.1.p 666 DNQMRLLYEKEFFGREAINVIACEGTERVERPETYKQWQIRNMRAGFKQLPLGPAVMKRLRSKLEQFHDD-FVVDEDGQWMLQGWKGRILFAS 757
                       ********************************************************************66.********************** PP

              GRAS 371 SaW 373
                       S W
  Eucgr.J02044.1.p 758 SWW 760
                       **9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.389365742IPR005202Transcription factor GRAS
PfamPF035144.7E-110391760IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MIMEPRVTRF SGSLSAFKLD DETLLPFSDQ RANFANGFDR AGPSPDLGFA HKPFFPSDPR  60
YCDSAPSSLV SAEADLPSDD SDFSETVFRY INHMLLEEDM EENPSTFHDP LALQAAEKSL  120
YEALSEPYPS EANSSPPFMD SPDNNYSGNS SDYGKSSPSS NTSGSNFADH QWLGDLGDGR  180
NNLPRSSVTG DFIFQSTVNA HVQPSFSSRN SFLSNGNRTK ASLGSGPLFL NFSTESQSVL  240
QFQRGVEEAS KFLPQGTQLF IDLEKSSVNS WFKERKSLNV VKVEKDESDL LPLNGISGKK  300
NHQREDSEFE DERSNKQTAV YVDDTELSEM MDKLLVCHIK GKSQDSNADE SSKKEVSKSL  360
QQNRQTHTAD GGKFHNKKPT PTSNMTEMVD LRTLLILCAQ AVSSDDRRTA NDYLRQIRQH  420
ASPSGDGSQR LAHYFANGLE ARLEGTGSQV YAALGSKKTS AVDLLKAYHV YRTAFPFQRV  480
ANMFVGDMIM HLAEKATTLH IIDFGISNGF QWPAFISRLS RRTGGPPKLR ITGIELPQRG  540
FRPAEKVQET GRHLAQFCKR FNVPFEYNAI AQKWDTIKIG DIKIRNGETI VVNTMFRFKN  600
LLDETVVLNN PRDSVLNLIR KIRPHLFVQA IVNGSFGAPF FVTRFREALF HYSALFDAFD  660
TNLGRDNQMR LLYEKEFFGR EAINVIACEG TERVERPETY KQWQIRNMRA GFKQLPLGPA  720
VMKRLRSKLE QFHDDFVVDE DGQWMLQGWK GRILFASSWW VPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4839876226380Protein SCARECROW
5b3h_A7e-4839876225379Protein SCARECROW
5b3h_D7e-4839876225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033118.10.0PREDICTED: scarecrow-like protein 14 isoform X1
RefseqXP_018719600.10.0PREDICTED: scarecrow-like protein 14 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059AG790.0A0A059AG79_EUCGR; Uncharacterized protein
STRINGXP_010033118.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]