PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02073.1.p
Common NameEUGRSUZ_J02073, LOC104422514
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 249aa    MW: 28330.5 Da    PI: 7.4544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-1961106148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T++E++l v++++++G++ W++Iar+++ gRt++++k++w++y+
  Eucgr.J02073.1.p  61 RGKMTPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 106
                       89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.658155IPR017877Myb-like domain
SuperFamilySSF466894.9E-2241111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-94167IPR009057Homeodomain-like
PROSITE profilePS5129427.27856110IPR017930Myb domain
SMARTSM007173.4E-1760108IPR001005SANT/Myb domain
PfamPF002494.3E-1761105IPR001005SANT/Myb domain
CDDcd001671.82E-1263106No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2068107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDRTGGLQAG LLCGLVWRST MGFYSQGFRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEEK LVVELHAKWG NRWSRIARKL PGRTDNEIKN YWRTYMRKKA QERKHPIPPS  120
SSSSSSSNCY SSTSNNPPAD LLPFQATGEV SYYDTGGPNV STPTRKKSEE KEDHEKGDSM  180
DDIWKDITAS EETNDITQSY NCFSDESYSF TCPQMASPAW ELYSDSLWKM DEEEGEMLLS  240
MSNHYSSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-174211037105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-174211060128MYB TRANSFORMING PROTEIN
1mse_C1e-174211037105C-Myb DNA-Binding Domain
1msf_C1e-174211037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02073.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033161.10.0PREDICTED: transcription factor MYB48 isoform X1
SwissprotQ9LX822e-68MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059AGB70.0A0A059AGB7_EUCGR; Uncharacterized protein
STRINGXP_010033162.11e-155(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.44e-77myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]