PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J02073.2.p

Common Name

EUGRSUZ_J02073

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 186aa MW: 21289.3 Da PI: 4.7265

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J02073.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.9e-18	2	43	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E++l v++++++G++ W++Iar+++ gRt++++k++w++y+ Eucgr.J02073.2.p 2 TPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 43 9***************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.236	1	47	IPR017930	Myb domain
CDD	cd00167	3.89E-12	1	43	No hit	No description
SMART	SM00717	5.2E-12	1	45	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-16	2	42	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.36E-13	2	47	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-20	2	44	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MTPQEEKLVV ELHAKWGNRW SRIARKLPGR TDNEIKNYWR TYMRKKAQER KHPIPPSSSS 60 SSSSNCYSST SNNPPADLLP FQATGEVSYY DTGGPNVSTP TRKKSEEKED HEKGDSMDDI 120 WKDITASEET NDITQSYNCF SDESYSFTCP QMASPAWELY SDSLWKMDEE EGEMLLSMSN 180 HYSSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J02073.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033161.1	1e-135	PREDICTED: transcription factor MYB48 isoform X1
Swissprot	Q9LX82	1e-47	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A059AF61	1e-135	A0A059AF61_EUCGR; Uncharacterized protein
TrEMBL	A0A059AGB7	1e-134	A0A059AGB7_EUCGR; Uncharacterized protein
STRING	XP_010033162.1	1e-134	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.2	7e-47	myb domain protein 48

Link Out ? help Back to Top
Phytozome	Eucgr.J02073.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]