PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02113.1.p
Common NameEUGRSUZ_J02113, LOC104422542
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 484aa    MW: 52813.8 Da    PI: 5.7592
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17149198155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Eucgr.J02113.1.p 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198
                       78*******************......55************************998 PP
2AP241.24.2e-13241291155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Eucgr.J02113.1.p 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 291
                       89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-16149207IPR016177DNA-binding domain
PfamPF008472.2E-9149198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-17150207IPR001471AP2/ERF domain
PROSITE profilePS5103217.82150206IPR001471AP2/ERF domain
CDDcd000183.22E-11150208No hitNo description
SMARTSM003801.4E-31150212IPR001471AP2/ERF domain
CDDcd000182.30E-25241301No hitNo description
SuperFamilySSF541717.85E-17241300IPR016177DNA-binding domain
PfamPF008471.3E-8241291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15242299IPR001471AP2/ERF domain
SMARTSM003801.8E-32242305IPR001471AP2/ERF domain
PROSITE profilePS5103215.527242299IPR001471AP2/ERF domain
PRINTSPR003675.2E-6243254IPR001471AP2/ERF domain
PRINTSPR003675.2E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLDLNLNEEL SISESAWDES SVAIVKELPE APGAQMDESG TSNSSIVNAD GCDDESCSTR  60
AADARTFSFG ILKAGEGGDG VADDELGVTR QLFPVREVDA DMEWCGESSS LDKRSDVFLV  120
GACKEKEGPR LAMPQQRRKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGLD ADINFNLSDY EDDFKQMKNL SKEEFVHILR RQSTGFSRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN GREAVTNFEP  300
STYDGEMIAK ASNENSIYGD HGLDLNLGIS ASSRGMVETL EPSDDMRQGS SLRVGNSAAS  360
WGDPSVEGLS MTSGQPPPWT GVYPSVFPCM ERAKEKICGL GLSQGLATWA TQMHGQVNSA  420
PLPLLSAAAS SGFSMSAAHR SPVIPPPILT DSTSQSNRFT SPSSAVNNIS RGYYQLTPQW  480
PPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141QRRKSRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02113.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033195.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotQ8H4431e-106AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A059AHA60.0A0A059AHA6_EUCGR; Uncharacterized protein
STRINGXP_010033195.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-104related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]