PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02131.1.p
Common NameEUGRSUZ_J02131
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 390aa    MW: 44069.4 Da    PI: 8.2634
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-1569128155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Eucgr.J02131.1.p  69 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 128
                       789******************888855556447*************************98 PP
2AP252.41.3e-16171222155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Eucgr.J02131.1.p 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
                       89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1269128IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1669138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-1570137IPR001471AP2/ERF domain
PROSITE profilePS5103219.69170136IPR001471AP2/ERF domain
SMARTSM003807.6E-2570142IPR001471AP2/ERF domain
PRINTSPR003672.8E-57182IPR001471AP2/ERF domain
PfamPF008474.8E-12171222IPR001471AP2/ERF domain
CDDcd000185.99E-25171232No hitNo description
SuperFamilySSF541716.41E-18171232IPR016177DNA-binding domain
PROSITE profilePS5103218.953172230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18172231IPR001471AP2/ERF domain
SMARTSM003801.6E-26172236IPR001471AP2/ERF domain
PRINTSPR003672.8E-5212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVMVKTEENV RRRRVCMAAN GEALQPRCMK RRRRDPASMV LLSCGNDGQA QQPLQGDQMS  60
SAAAVKRSSR FRGVSRHRWT GRYEAHLWDK LSWNVTQRKK GKQVYLGAYD EEEAAARAYD  120
LAALKYWGTS TFTNFPISDY EKEIEIMDSM TKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSSYIRWLKP  240
GTNTPTAALE QLGPLEPQIV PSTPNFVVRE ESDKSLLFNA NTLAADYLDS PQKPDVFEAK  300
VPLSSRNKSS SPTALSLLLR SSVFQELVQK NTVLSEEDTD GEETKIQPQL SNEDEFAGIF  360
YAGEGNFPFD CYTGQDDIGL QQRELQFVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11133RRRVCMAANGEALQPRCMKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02131.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033215.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A059AGJ30.0A0A059AGJ3_EUCGR; Uncharacterized protein
STRINGXP_010033215.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-81AP2 family protein