PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02186.1.p
Common NameEUGRSUZ_J02186
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 245aa    MW: 27526.4 Da    PI: 4.6159
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02186.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-203285356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++t+eq++ Le+ Fe ++++  e++++LAkklg++ rqV vWFqNrRa++k
  Eucgr.J02186.1.p 32 KKRRLTPEQVHLLEKSFEVENKLEPEKKTQLAKKLGMQPRQVAVWFQNRRARWK 85
                      5678*************************************************9 PP
2HD-ZIP_I/II132.51.5e-4231122192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv+lLE+sFe e+kLepe+K++la++Lg+qprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l  + ++++ke+e+L++e++
  Eucgr.J02186.1.p  31 EKKRRLTPEQVHLLEKSFEVENKLEPEKKTQLAKKLGMQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLLSYDSIKKENEKLKSEVN 122
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.8312787IPR001356Homeobox domain
SMARTSM003896.9E-203091IPR001356Homeobox domain
SuperFamilySSF466892.22E-203198IPR009057Homeodomain-like
PfamPF000469.0E-183285IPR001356Homeobox domain
CDDcd000862.65E-193288No hitNo description
Gene3DG3DSA:1.10.10.604.3E-223394IPR009057Homeodomain-like
PRINTSPR000319.3E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000319.3E-66783IPR000047Helix-turn-helix motif
PfamPF021832.0E-1787128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGIEEATKRQ SIFSYPEDLY NEEYYDDQAP EKKRRLTPEQ VHLLEKSFEV ENKLEPEKKT  60
QLAKKLGMQP RQVAVWFQNR RARWKTKQLE RDYDVLKSSY DSLLLSYDSI KKENEKLKSE  120
VNFLNEKLSA KDVAGAPASG QSSHALQVEE TRDSPLGFVV KVEDRLSSGS GGSAVVDEDG  180
PQLVDSGHSY FHCNDYPGSL VAVNGLQSED DGSDDSRGYC SEIFAAAEEP HQEGGVPMGW  240
WAWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02186.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818418e-37LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132588e-37LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033267.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-78HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A059AGR71e-180A0A059AGR7_EUCGR; Uncharacterized protein
STRINGXP_010033267.11e-180(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-67homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]