PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J02237.1.p

Common Name

EUGRSUZ_J022372, LOC104422633

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 176aa MW: 19452.8 Da PI: 6.6518

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J02237.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.2	1.4e-43	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e Eucgr.J02237.1.p 11 PCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKE 103 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Eucgr.J02237.1.p 104 LDATNA 109 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.418	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MASSSGYSSS PCAACKFLRR KCLPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEVL 60 PHQREDTVNS LAYEAEARLK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LIQYTCREMP 120 STVSRPVHYR RKNNNNMVQV YGDGGFDQNC GGYYHPNAWS NVHDGDGQEG DDGGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-65	2	119	2	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-65	2	119	2	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J02237.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033314.1	1e-131	PREDICTED: LOB domain-containing protein 25 isoform X1
Swissprot	Q9FML4	2e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A059AGJ2	1e-130	A0A059AGJ2_EUCGR; Uncharacterized protein
STRING	XP_010033314.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-66	LBD family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J02237.1.p
Entrez Gene	104422633

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]