PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J02250.1.p

Common Name

EUGRSUZ_J02250, LOC104422646

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 115aa MW: 13425.4 Da PI: 11.2656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J02250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.3e-30	17	108	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa C+v+++kC kdC apyfpa ++++f ++h++FG + ++++l+++p+++r da++slvyeA+ar +dPv+G g + ++ + e+l++ Eucgr.J02250.1.p 17 ACARCRVMKKKCWKDCRWAPYFPAGEHERFTILHRVFGGNMIMEILQQVPNDRRADAIHSLVYEANARENDPVNGRRGQLAQMIAEEERLQV 108 7*****************************************************************************99999888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.240.10	1.2E-5	8	30	IPR001138	Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profile	PS50891	19.93	16	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-28	17	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0000981	Molecular Function	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDGGGVRRRR RRRRRRACAR CRVMKKKCWK DCRWAPYFPA GEHERFTILH RVFGGNMIME 60 ILQQVPNDRR ADAIHSLVYE ANARENDPVN GRRGQLAQMI AEEERLQVPH QADG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	18	107	12	101	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	18	107	12	101	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	15	RRRRRRRRR
2	8	15	RRRRRRRR
3	9	15	RRRRRRR
4	9	26	RRRRRRRACARCRVMKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J02250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056712.1	3e-31	PREDICTED: LOB domain-containing protein 4
Refseq	XP_010058105.1	3e-31	PREDICTED: LOB domain-containing protein 4
TrEMBL	A0A059AGU2	3e-78	A0A059AGU2_EUCGR; Uncharacterized protein
STRING	XP_010033333.1	5e-79	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35076	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-24	LBD family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J02250.1.p
Entrez Gene	104422646