PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02278.2.p
Common NameEUGRSUZ_J02278
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 236aa    MW: 27408.6 Da    PI: 9.5165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02278.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000223962123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      ++C++C ksF    +L rH  + H
  Eucgr.J02278.2.p 39 WRCGYCRKSFYEEKYLDRHFDNrH 62
                      58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6423962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MPFIEKERYQ LPNKCRLHPD YNFYGDQEQH KIHVDINEWR CGYCRKSFYE EKYLDRHFDN  60
RHYDLLNVSQ GKCLADLCGA LHCDLVMDSV QKKTKCNPAA AVRNKHLCES LADSCFPVKE  120
GPSSSRLHEF FLRQFCDAHT CNGRQKPFSK GRRVKKKHIL HRHVYSGSLA VATVLSLCLL  180
VSKGNKKRYT RFEARHRKYT EEKTVLSLWV HKLLSLIVSF SSLFSVSLNL ALEPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02278.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033364.11e-114PREDICTED: uncharacterized protein LOC104422670 isoform X1
TrEMBLA0A059AH621e-174A0A059AH62_EUCGR; Uncharacterized protein
STRINGXP_010033364.11e-114(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.15e-80C2H2-like zinc finger protein